The default href with PowerUI is resources:// soresources:// so you don't need 'Resources/'Resources/ just "/bootstrapUnity.css". /bootstrapUnity.css.
(If you have the .bytes extension added, this means you don't need it mentioned in the HTML file, as Unity will 'name' it without .bytes so that .css/.js links work normally..)..
Assuming bootstrapUnity.css.bytesbootstrapUnity.css.bytes is in the root of a 'resources' folder, try:
<link href="/bootstrapUnity.css"/>