81 questions
1
vote
0
answers
47
views
Issue with Formative PLS-SEM Model in seminr Package for Economic Development Index
I am working on a formative PLS-SEM model to create an economic development index using the seminr package in R. In my model, I have 4 latent variables (Education, Health, Infrastructure, and ...
- 365
0
votes
0
answers
66
views
Force Partial Least Squares solver to only consider positive results
I am using the Partial Least Squares (PLS) solver for data analysis of several overlaid spectral signals. Sometimes I am getting some of the weaker signals coming out as negative values which is not ...
- 51
1
vote
1
answer
115
views
Confusion matrix for PLSDA in R: "Error: `data` and `reference` should be factors with the same levels."
I am trying to run a Partial Least Squares Discriminant Analysis (PLSDA) in R, followed by a prediction and confusion matrix, using the mdatools package. The mdatools::plsda function works normally, ...
1
vote
0
answers
141
views
Understanding and Validating PLS Regression Coefficients
In this problem, the goal is to understand and validate the coefficients of a Partial Least Squares (PLS) regression model. The PLS regression equation is assumed to be in the form of y = b + b_1(X_1)...
0
votes
1
answer
1k
views
How do I install scripy into Python?
I am trying to install scripy into python using the administrator command on windows 10. the error message i get is:
note: This error originates from a subprocess, and is likely not a problem with ...
- 1
0
votes
0
answers
29
views
name:instagram automatic reels scrolling project status:failed
from selenium *import* webdriver
from selenium.webdriver.common.by *import* By
from selenium.webdriver.support.ui *import* WebDriverWait
from selenium.webdriver.support *import* expected_conditions ...
- 1
0
votes
0
answers
147
views
PLS in Python from scratch - matrix dimension problem
I am attempting to write the code for PLS from scratch without using the scikit function. I obtain the following dimension problem that arises
from the coefficient computation ---> 56 self.coef_ = ...
- 23
1
vote
0
answers
145
views
How to change the color of the score plot in PLS analysis in the ropls package?
How to change the color of the score plot in PLS analysis in the ropls package?
library(ropls)
data(sacurine)
sacurine.pls <- opls(x = sacurine$dataMatrix, y = sacurine$sampleMetadata[, 'bmi'], ...
- 11
1
vote
1
answer
268
views
'more segments than observations requested' error with PLS model in R
Here is my data:
Sample_ID Trt Litter_Type Plot Pk_1030 Pk_1040 Pk_1050 Pk_1060 Pk_1150 Pk_1160
1 1-T-R-329 Trenched Red 1 0.991 NA NA 1.000 NA NA
2 1-T-W-...
- 11
0
votes
0
answers
80
views
PLS model in R is not recognizing one of my variables
I am working on running a PLS model in R to analyze data I have for FTIR and Enzyme activity. For some reason it is giving me error message that it can't find "Pk_1260" which is one of my ...
- 11
1
vote
0
answers
59
views
Variables in 6 components PLSR using pls package in R?
My mentor asked me to use PLSR in R to analyze some data he had sitting around. I used the pls package and created a mvr workspace object using the following syntax:
posamodel <- plsr(posa ~ ...
0
votes
1
answer
43
views
How to pass additional function in already constrained do.call function creation?
I have created two reprexes below. The one shows the basic do.call working in the expected way. The second one is not working. I am trying to pass functions as arguments to weights in multi_items but ...
0
votes
1
answer
674
views
PLS-DA Formatting a Graph in R
Here is code from an example I was viewing from a mix0mics package about PLS-DA.
library(mixOmics)
data(srbct)
X <- srbct$gene
Y <- srbct$class
final.plsda.srbct <- plsda(X,Y, ncomp = 3)
...
- 259
0
votes
0
answers
69
views
How can external coefficient values (saved in CSV) to be used to predict model in R?
I have data containing 100 obs, with 50 X-variables and 1 Y-variable.
For 100 permutation,
I have randomly divided data in 60-40 for training and testing respectively and run a pls (from pls package ...
- 1
-1
votes
1
answer
49
views
i have a problem with the importation of sql
i have a problem with the importation of sql
import sqlite3
connection = sqlite3.connect('database.db')
with open('crea_posts.sql') as f:
connection.executescript(f.read())
connection.commit()
...
0
votes
0
answers
167
views
Can a formative measurement model be adequately modelled in Lavaan or is that only possible with PLS Path Modeling? + ParcelAllocation Function
I am currently faced with the question. Do I include the variable XX reflectively, formatively or as a scale value in the model?
Theoretically, there is a lot to be said for a formative measurement ...
- 21
0
votes
1
answer
465
views
Translate Matlab PLS Regression code to Python
Matlab
I have some PLSR regression in Matlab that I need to translate to Python. The Matlab code is as follows:
% PLSR with 15 latent variables
[~,~,~,~,~,MSEcv] = plsregress(X,y,15,"cv",5,&...
- 1,215
0
votes
0
answers
116
views
Consistent error message while running grouping analysis in 'plspm' package
I am looking for some help in resolving an error using the partial least squares path modeling package ('plspm').
I can get results running a basic PLS-PM analysis but run into issues when using the ...
-1
votes
1
answer
110
views
How to activate some lights after a short delay in Unity?
I want the lights to be activated a little after "me" has been activated.
public class LightsOut : MonoBehaviour
{
public GameObject NextTrigger;
public GameObject Voiceline;
...
- 11
1
vote
1
answer
789
views
why doesn't y_pred = X @ coef_ + intercept_ for sklearn PLSRegression?
I performed partial least squares regression using Python's sklearn.cross_decomposition.PLSRegression using the example data in the sklearn docs. I am surprised that X @ coef_ + intercept_ does not ...
- 11
1
vote
0
answers
141
views
Problem implementing Partial Least Squares Regression
I’m trying to implement the Partial Least Squares Regression model in R using the pls package. The following data frame represents my data, where I have two response variables and three explanatory ...
- 125
1
vote
1
answer
286
views
Get the proportion of the variance explained in a plsda with recipes
I try to compute the proportion of the variance explained by each component in a PLSDA, using the tidymodels framework.
Here's the "gold standard" result with the mixOmics package:
library(...
- 2,445
0
votes
1
answer
256
views
How to extract PLSR coefficients as for glmnet using tidymodels
I tuned a glmnet regression model and extracted the coefficients as described here. That works wonderfully. However, when I use the same form of coefficient extraction for PLSR with mixOmics engine, I ...
- 1
0
votes
0
answers
44
views
how to weight imbalance class for ordered logistic classification machine learning
I have a question about predicting wine quality (classic wine dataset from UCI). I use ordered logistic classification in PLSR after joining white and red in the same dataset. There are imbalanced ...
- 21
0
votes
1
answer
323
views
PLS (Perl Language Server) on BBEdit Doesn't Seem to Do Anything?
I do most of my development work in BBEdit, which thankfully now supports Language Server Protocol and specifically PLS, a Perl implementation thereof. Near as I can tell, everything is set up ...
- 1,139
0
votes
1
answer
573
views
how to use R package `caret` to run `pls::plsr( )` with multiple responses
the caret::train() does not seem to accept y if y is a matrix of multiple columns.
Thanks for any help!
- 525
-1
votes
1
answer
325
views
Why isn't my React js button onMouseDown not working?
<div className="commentinputMain">
<img
className="commentinputPic"
src={PF + user.profilePic}
...
0
votes
0
answers
69
views
Compare automatically all possible combinations (1 vs 1) (1 vs 1+2), etc in a function in R
Following my previous question, and with the same example, I would like to modify the groups in the comparison.
Just to remember, I am running a PLS regression by using geomorph.
This function ...
- 2,800
1
vote
0
answers
377
views
impute missing data using Niplas algorithm (PLS) in python
I have an array with values between 0 - 255 and one missing (nan), its shape is (27, 36). I tried to impute the missing data using the Nipals algorithm. After searching I found that there is a PLS ...
0
votes
1
answer
194
views
How to do PLS (Mixomics) with more than 2 blocks of data?
i am doing PLS with Mixomics package. I have 2 blocks of data, Performances and MethodesAlter.
R code :
Y <- Performances
X3 <- MethodesAlter
rownames(X3) <- rownames(Y)
pls1 <- pls(X3, Y,...
0
votes
1
answer
185
views
Want to get input on same line for variables at different places in Python3. See the below code and text for clarification
I want to take input of how many inputs the user is going to give next and collect those inputs in a single line. For eg. if user enters '3' next he has to give 3 inputs like '4' '5' '6' on the same ...
- 3
0
votes
0
answers
245
views
How to use ropls package to split into 80%-20% training and test sets?
I'm trying to use for the first time the ropls package to perform PLS-DA and OPLS-DA predictive models, and as I saw on its documentation, the algorithm provides the option subset="odd", ...
- 1
0
votes
4
answers
3k
views
How to change image size with slider?
I have this bit of code and I was wondering if it is possible to change the size of the image just by moving the slider:
<div class="slidecontainer">
<input type="range" min="1" max="20"...
0
votes
1
answer
593
views
Recursive Feature Elimination Error - "Error in { : task 1 failed - "wrong sign in 'by' argument"
Thank you so much for your help ahead of time. I'm currently working with a data set that has 794 observations and 1023 variables. I'm attempting to do some sort of feature selection on the data. My ...
- 119
2
votes
1
answer
1k
views
Why do PLS regression coefficients with R [pls] differ with those from other R packages?
Out of curiosity, I am trying to figure out why the PLS regression coefficients obtained with pls differ from the coefficients obtained with plsRglm, ropls, or plsdepot which all provide the same ...
- 1,481
1
vote
0
answers
550
views
Error in eval(predvars, data, env) : object ' ' not found in R pls()
I've seen this question come up a lot but have yet to find a satisfactory solution, particularly for my case.
I am running partial least squares regression in R using pls() package, and would then ...
- 11
0
votes
1
answer
165
views
How to use lapply with get.confusion_matrix() in R?
I am performing a PLS-DA analysis in R using the mixOmics package. I have one binary Y variable (presence or absence of wetland) and 21 continuous predictor variables (X) with values ranging from 1 to ...
- 71
-1
votes
1
answer
61
views
I am getting "await is only valid in async function" error my code is something like this [duplicate]
if(command === clear){
const amount = arg.join(" ");
if(!amount) return message.reply('please provide an amount of messages for me to delete')
if(amount > 100) return message....
0
votes
1
answer
1k
views
How to get the confidence level of detectMultiScale in "Python" OpenCV?
I was working on my research and currently stuck on this.
I can't get the confidence level AT ALL.
I've tried many commands, such as:
outputRejectLevels = "levelWeights"
outputRejectLevels = ...
- 35
1
vote
1
answer
693
views
Predictor importance for PLS model trained with tidymodels
I'm using tidymodels to fit a PLS model but I'm struggling to find the PLS variable importance scores or coefficients.
This is what I've tried so far; the example data is from ...
- 1,206
0
votes
1
answer
566
views
SEM PLS on R - plspm does not install
I need to run SEM (with PLS) analysis, and was provided script that is used the plspm package.
I tried to install but it says it's no longer available for current R update.
Warning in install.packages ...
- 979
0
votes
1
answer
409
views
Difference between fitted values and cross validation values from pls model in r
I only have a small dataset of 30 samples, so I only have a training data set but no test set. So I want to use cross-validation to assess the model. I have run pls models in r using cross-validation ...
- 1
0
votes
1
answer
1k
views
Python PLSRegression : obtaining the latent variables scores using loadings
In sklearn.cross_decomposition.PLSRegression, we can obtain the latent variables scores from the X array using x_scores_.
I would like to extract the loadings to calculate the latent variables scores ...
- 183
3
votes
1
answer
7k
views
.contains doesnt work like i thought it would Flutter/Dart
I am very new to Flutter and I run into a Problem. I want to check if the List: items, contains the word
Hey and I know it does. So I wrote: if(items.contains('Hey')) to check. But it seems to skip ...
user13957100
0
votes
1
answer
616
views
Python error in GridSearchCV: "Only one class present in y_true. ROC AUC score is not defined in that case."
I am using GridSearchCV to find the best parameters (number of components) of a PLS-DA model (partial least squares discriminant analysis).
y_train is a np array that looks like [1111....0000], so ...
- 183
0
votes
1
answer
3k
views
How to install mixOmics packages in R version 4.0.0?
I have tried install package mixOmics but failed.
The output at console below:
install.packages("mixOmics")
Installing package into ‘/home/rstudio-user/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ ...
0
votes
1
answer
896
views
Undefined reference to (readline, pthread_create, pthread_detach), makefile not including libraries
This may be a simple answer but I am trying to compile code for a simple User level file system. I am running my code on a windows Ubuntu subsystem.
I have all the lpthread and lreadline libraries ...
- 3
0
votes
1
answer
138
views
Error in running Python code for PLSR modelling
I am trying to develop model using PLSR (Partial Least Squares Regression) in Python3 using code provided https://github.com/pgbrodrick/ensemblePLSR. Sample data is also provided.
When I try to run ...
- 1
-3
votes
3
answers
2k
views
data type in struct c++
I'm new to programming and this is my first year of C++.
All I've understood is that structures are variables with many different data types...
I was wondering if it is like a container of data types....
- 29
2
votes
2
answers
341
views
Pygame Character wont move left or right
In my below code using PyGame, the character won't move left or right and the bullet won't shoot. I'm not sure what's causing this. It works without the whole start menu with buttons concept so I was ...
- 91